Source: libvcflib
Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Andreas Tille <tille@debian.org>,
Section: science
Build-Depends:
 debhelper-compat (= 14),
 architecture-is-64-bit,
 architecture-is-little-endian,
#               d-shlibs, # Switch to d-shlibs once shared and static lib are built
 cmake,
 discount <!nodoc>,
 libbz2-dev,
 libdisorder-dev,
 libfastahack-dev,
 libgtest-dev <!nocheck>,
 libhts-dev,
 liblzma-dev,
 libsmithwaterman-dev,
 libssw-dev,
 libtabixpp-dev,
 libwfa2-dev,
 pkgconf,
 python3-dev,
 python3-pybind11,
 zlib1g-dev,
Vcs-Browser: https://salsa.debian.org/med-team/libvcflib
Vcs-Git: https://salsa.debian.org/med-team/libvcflib.git
Homepage: https://github.com/vcflib/vcflib

Package: libvcflib2
Architecture: any
Multi-Arch: same
Section: libs
Depends:
 ${misc:Depends},
 ${shlibs:Depends},
Description: C++ library for parsing and manipulating VCF files
 The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
 intended to concisely describe reference-indexed variations between
 individuals. VCF provides a common interchange format for the description of
 variation in individuals and populations of samples, and has become the defacto
 standard reporting format for a wide array of genomic variant detectors.
 .
 vcflib provides methods to manipulate and interpret sequence variation as it
 can be described by VCF. It is both:
 .
  * an API for parsing and operating on records of genomic variation as it can
    be described by the VCF format,
  * and a collection of command-line utilities for executing complex
    manipulations on VCF files.

Package: libvcflib-dev
Architecture: any
Multi-Arch: same
Section: libdevel
Depends:
 libdisorder-dev,
 libfastahack-dev,
 libsmithwaterman-dev,
 libssw-dev,
 libtabixpp-dev,
 libvcflib2 (= ${binary:Version}),
 libwfa2-dev,
 ${misc:Depends},
Description: C++ library for parsing and manipulating VCF files (development)
 The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
 intended to concisely describe reference-indexed variations between
 individuals. VCF provides a common interchange format for the description of
 variation in individuals and populations of samples, and has become the defacto
 standard reporting format for a wide array of genomic variant detectors.
 .
 vcflib provides methods to manipulate and interpret sequence variation as it
 can be described by VCF. It is both:
 .
  * an API for parsing and operating on records of genomic variation as it can
    be described by the VCF format,
  * and a collection of command-line utilities for executing complex
    manipulations on VCF files.
 .
 This package contains the static library and the header files.

Package: libvcflib-tools
Architecture: any
Depends:
 python3:any,
 ${misc:Depends},
 ${shlibs:Depends},
Recommends:
 r-base-core,
 r-cran-ggplot2,
 r-cran-plyr,
 r-cran-pracma,
Description: C++ library for parsing and manipulating VCF files (tools)
 The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
 intended to concisely describe reference-indexed variations between
 individuals. VCF provides a common interchange format for the description of
 variation in individuals and populations of samples, and has become the defacto
 standard reporting format for a wide array of genomic variant detectors.
 .
 vcflib provides methods to manipulate and interpret sequence variation as it
 can be described by VCF. It is both:
 .
  * an API for parsing and operating on records of genomic variation as it can
    be described by the VCF format,
  * and a collection of command-line utilities for executing complex
    manipulations on VCF files.
 .
 This package contains several tools using the library.
